Bernardo, Diego di: search on Z-Library

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1

A Model of Two Nonlinear Coupled Oscillators for the Study of Heartbeat Dynamics

di Bernardo, Diego, Signorini, Maria G.

Journal:

International Journal of Bifurcation and Chaos

Year:

1998

Language:

english

File:

PDF, 446 KB

english, 1998

2

A tunable dual-input system for on-demand dynamic gene expression regulation

Pedone, Elisa, Postiglione, Lorena, Aulicino, Francesco, Rocca, Dan L., Montes-Olivas, Sandra, Khazim, Mahmoud, di Bernardo, Diego, Pia Cosma, Maria, Marucci, Lucia

Journal:

Nature Communications

Year:

2019

File:

PDF, 1.92 MB

2019

3

How to infer gene networks from expression profiles

Bansal, Mukesh, Belcastro, Vincenzo, Ambesi-Impiombato, Alberto, di Bernardo, Diego

Journal:

Molecular Systems Biology

Year:

2007

Language:

english

File:

PDF, 59 KB

english, 2007

4

Analysis, design and implementation of a novel scheme for in-vivo control of synthetic gene regulatory networks

Filippo Menolascina, Mario di Bernardo, Diego di Bernardo

Journal:

Year:

2011

Language:

english

File:

PDF, 795 KB

english, 2011

5

[IEEE Distributed Methods in Verification and 2nd Intl Wkshp on High Performance Computational Systems Biology (PDMC-HiBi) - Enschede, TBD, Netherlands (2010.09.30-2010.10.1)] 2010 Ninth International Workshop on Parallel and Distributed Methods in Verification, and Second International Workshop on High Performance Computational Systems Biology - Parallel Computing Algorithms for Reverse-Engineering and Analysis of Genome-Wide Gene Regulatory Networks from Gene Expression Profiles

Belcastro, Vincenzo, Bernardo, Diego di, Gregoretti, Francesco, Oliva, Gennaro

Year:

2010

Language:

english

File:

PDF, 1011 KB

english, 2010

6

miRNAs confer phenotypic robustness to gene networks by suppressing biological noise

Siciliano, Velia, Garzilli, Immacolata, Fracassi, Chiara, Criscuolo, Stefania, Ventre, Simona, di Bernardo, Diego

Journal:

Nature Communications

Year:

2013

Language:

english

File:

PDF, 456 KB

english, 2013

7

Id proteins synchronize stemness and anchorage to the niche of neural stem cells

Niola, Francesco, Zhao, Xudong, Singh, Devendra, Castano, Angelica, Sullivan, Ryan, Lauria, Mario, Nam, Hyung-song, Zhuang, Yuan, Benezra, Robert, Di Bernardo, Diego

Journal:

Nature Cell Biology

Year:

2012

Language:

english

File:

PDF, 3.48 MB

english, 2012

8

Chemogenomic profiling on a genome-wide scale using reverse-engineered gene networks

di Bernardo, Diego, Thompson, Michael J, Gardner, Timothy S, Chobot, Sarah E, Eastwood, Erin L, Wojtovich, Andrew P, Elliott, Sean J, Schaus, Scott E, Collins, James J

Journal:

Nature Biotechnology

Year:

2005

Language:

english

File:

PDF, 570 KB

english, 2005

9

Medical physics: Explaining the T-wave shape in the ECG

di Bernardo, Diego, Murray, Alan

Journal:

Year:

2000

Language:

english

File:

PDF, 54 KB

english, 2000

10

Design and Construction of a Versatile Synthetic Network for Bistable Gene Expression in Mammalian Systems

Polynikis, Athanasios, Cuccato, Giulia, Criscuolo, Stefania, Hogan, Stephen J., Bernardo, Mario Di, Bernardo, Diego Di

Journal:

Journal of Computational Biology

Year:

2011

Language:

english

File:

PDF, 512 KB

english, 2011

11

Evaluation of a systems biology approach to identify pharmacological correctors of the mutant CFTR chloride channel

Pesce, Emanuela, Gorrieri, Giulia, Sirci, Francesco, Napolitano, Francesco, Carrella, Diego, Caci, Emanuela, Tomati, Valeria, Zegarra-Moran, Olga, di Bernardo, Diego, Galietta, Luis J.V.

Journal:

Journal of Cystic Fibrosis

Year:

2016

Language:

english

File:

PDF, 1.88 MB

english, 2016

12

[IEEE 2016 IEEE 55th Conference on Decision and Control (CDC) - Las Vegas, NV, USA (2016.12.12-2016.12.14)] 2016 IEEE 55th Conference on Decision and Control (CDC) - Modelling, simulation and control of single cell expression dynamics of the galactose-inducible promoter in yeast

Perrino, Giansimone, di Bernardo, Diego

Year:

2016

Language:

english

File:

PDF, 1.94 MB

english, 2016

13

Guest Editorial

di Bernardo, Diego

Journal:

IET Systems Biology

Year:

2016

Language:

english

File:

PDF, 41 KB

english, 2016

14

Intrinsic Abnormalities of Cystic Fibrosis Airway Connective Tissue Revealed by an In Vitro 3D Stromal Model

Mazio, Claudia, Scognamiglio, Laura S., Cegli, Rossella De, Galietta, Luis J.V., Bernardo, Diego Di, Casale, Costantino, Urciuolo, Francesco, Imparato, Giorgia, Netti, Paolo A.

Journal:

Year:

2020

File:

PDF, 1.54 MB

2020

15

Quantification of T Wave Shape Changes Following Exercise

PHILIP LANGLEY, DIEGO DI BERNARDO, ALAN MURRAY

Journal:

Pacing and Clinical Electrophysiology

Year:

2002

Language:

english

File:

PDF, 217 KB

english, 2002

16

Identifying Network of Drug Mode of Action by Gene Expression Profiling

Iorio, Francesco, Tagliaferri, Roberto, Bernardo, Diego di

Journal:

Journal of Computational Biology

Year:

2009

Language:

english

File:

PDF, 5.44 MB

english, 2009

17

Agent-Based Modeling of Endotoxin-Induced Acute Inflammatory Response in Human Blood Leukocytes

Dong, Xu, Foteinou, Panagiota T., Calvano, Steven E., Lowry, Stephen F., Androulakis, Ioannis P., Di Bernardo, Diego

Journal:

Year:

2010

Language:

english

File:

PDF, 1.07 MB

english, 2010

18

A Parallel Implementation of the Network Identification by Multiple Regression (NIR) Algorithm to Reverse-Engineer Regulatory Gene Networks

Gregoretti, Francesco, Belcastro, Vincenzo, di Bernardo, Diego, Oliva, Gennaro, Kingsford, Carl

Journal:

Year:

2010

Language:

english

File:

PDF, 90 KB

english, 2010

19

[IEEE 2019 18th European Control Conference (ECC) - Naples, Italy (2019.6.25-2019.6.28)] 2019 18th European Control Conference (ECC) - Towards feedback control of the cell-cycle across a population of yeast cells

Perrino, Giansimone, Fiore, Davide, Napolitano, Sara, di Bernardo, Mario, di Bernardo, Diego

Year:

2019

File:

PDF, 4.87 MB

2019

20

A tunable dual-input system for on-demand dynamic gene expression regulation

Pedone, Elisa, Postiglione, Lorena, Aulicino, Francesco, Rocca, Dan L., Montes-Olivas, Sandra, Khazim, Mahmoud, di Bernardo, Diego, Pia Cosma, Maria, Marucci, Lucia

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 1.92 MB

english, 2019

21

A transcriptomic study of Williams-Beuren syndrome associated genes in mouse embryonic stem cells

De Cegli, Rossella, Iacobacci, Simona, Fedele, Anthony, Ballabio, Andrea, di Bernardo, Diego

Journal:

Scientific Data

Year:

2019

Language:

english

File:

PDF, 1.49 MB

english, 2019

22

Quantitative Characterization of α-Synuclein Aggregation in Living Cells through Automated Microfluidics Feedback Control

Perrino, Giansimone, Wilson, Cathal, Santorelli, Marco, di Bernardo, Diego

Journal:

Year:

2019

Language:

english

File:

PDF, 4.19 MB

english, 2019

23

Quantitative Characterization of α-Synuclein Aggregation in Living Cells through Automated Microfluidics Feedback Control

Perrino, Giansimone, Wilson, Cathal, Santorelli, Marco, di Bernardo, Diego

Journal:

Year:

2019

File:

PDF, 4.19 MB

2019

24

TRPV4 and purinergic receptor signalling pathways are separately linked in airway epithelia to CFTR and TMEM16A chloride channels

Genovese, Michele, Borrelli, Anna, Venturini, Arianna, Guidone, Daniela, Caci, Emanuela, Viscido, Gaetano, Gambardella, Gennaro, di Bernardo, Diego, Scudieri, Paolo, Galietta, Luis J.V.

Journal:

The Journal of Physiology

Year:

2019

Language:

english

File:

PDF, 3.72 MB

english, 2019

25

Dispersion of QT Intervals: A Measure of Dispersion of Repolarization or Simply a Projection Effect?

DIEGO DI BERNARDO, PHILIP LANGLEY, ALAN MURRAY

Journal:

Pacing and Clinical Electrophysiology

Year:

2000

Language:

english

File:

PDF, 2.58 MB

english, 2000

26

Simulation of Heartbeat Dynamics: A Nonlinear Model

Signorini, Maria G., di Bernardo, Diego

Journal:

International Journal of Bifurcation and Chaos

Year:

1998

Language:

english

File:

PDF, 370 KB

english, 1998

27

Construction and Modelling of an Inducible Positive Feedback Loop Stably Integrated in a Mammalian Cell-Line

Siciliano, Velia, Menolascina, Filippo, Marucci, Lucia, Fracassi, Chiara, Garzilli, Immacolata, Moretti, Maria Nicoletta, di Bernardo, Diego, Ohler, Uwe

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 1.24 MB

english, 2011

28

In Silico Modeling of Liver Metabolism in a Human Disease Reveals a Key Enzyme for Histidine and Histamine Homeostasis

Pagliarini, Roberto, Castello, Raffaele, Napolitano, Francesco, Borzone, Roberta, Annunziata, Patrizia, Mandrile, Giorgia, De Marchi, Mario, Brunetti-Pierri, Nicola, di Bernardo, Diego

Journal:

Year:

2016

Language:

english

File:

PDF, 1.45 MB

english, 2016

29

A community-based resource for automatic exome variant-calling and annotation in Mendelian disorders

Mutarelli, Margherita, Marwah, Veer, Rispoli, Rossella, Carrella, Diego, Dharmalingam, Gopuraja, Oliva, Gennaro, di Bernardo, Diego

Journal:

Year:

2014

Language:

english

File:

PDF, 799 KB

english, 2014

30

Regulation of gene expression and signaling pathway activity in mammalian cells by automated microfluidics feedback control.

Postiglione, Lorena, Napolitano, Sara, Pedone, Elisa, Rocca, Daniel L., Aulicino, Francesco, Santorelli, Marco, Tumaini, Barbara, Marucci, Lucia, di Bernardo, Diego

Journal:

ACS Synthetic Biology

Year:

2018

Language:

english

File:

PDF, 1.22 MB

english, 2018

31

TFEB dynamical model reveals a novel feedback loop biological mechanism

Napolitano, Sara, Ruolo, Iacopo, Perrino, Giansimone, di Bernardo, Diego

Journal:

IFAC-PapersOnLine

Year:

2019

File:

PDF, 1.07 MB

2019

32

[IEEE 2019 IEEE 58th Conference on Decision and Control (CDC) - Nice, France (2019.12.11-2019.12.13)] 2019 IEEE 58th Conference on Decision and Control (CDC) - Feedback control promotes synchronisation of the cell-cycle across a population of yeast cells

Perrino, Giansimone, Fiore, Davide, Napolitano, Sara, Galdi, Francesca, Regina, Antonella La, di Bernardo, Mario, Bernardo, Diego di

Year:

2019

File:

PDF, 1.71 MB

2019

33

A Genome-Scale Modeling Approach to Study Inborn Errors of Liver Metabolism: Toward an In Silico Patient

Pagliarini, Roberto, di Bernardo, Diego

Journal:

Journal of Computational Biology

Year:

2013

Language:

english

File:

PDF, 558 KB

english, 2013

34

gene2drug: a Computational Tool for Pathway-based Rational Drug Repositioning

Napolitano, Francesco, Carrella, Diego, Mandriani, Barbara, Pisonero, Sandra, Sirci, Francesco, Medina, Diego, Brunetti-Pierri, Nicola, di Bernardo, Diego

Journal:

Year:

2017

Language:

english

File:

PDF, 1.19 MB

english, 2017

35

Network based elucidation of drug response: from modulators to targets

Iorio, Francesco, Saez-Rodriguez, Julio, Bernardo, Diego di

Journal:

BMC Systems Biology

Year:

2013

Language:

english

File:

PDF, 218 KB

english, 2013

36

Comparing structural and transcriptional drug networks reveals signatures of drug activity and toxicity in transcriptional responses

Sirci, Francesco, Napolitano, Francesco, Pisonero-Vaquero, Sandra, Carrella, Diego, Medina, Diego L., di Bernardo, Diego

Journal:

npj Systems Biology and Applications

Year:

2017

Language:

english

File:

PDF, 3.66 MB

english, 2017

37

NIRest: A Tool for Gene Network and Mode of Action Inference

Mario Lauria, Francesco Iorio, Diego Di Bernardo

Journal:

Annals of the New York Academy of Sciences

Year:

2009

Language:

english

File:

PDF, 217 KB

english, 2009

38

A network-based approach to dissect the cilia/centrosome complex interactome

Roberto Amato,Manuela Morleo,Laura Giaquinto,Diego di Bernardo…

Journal:

Year:

2014

Language:

english

File:

PDF, 1.63 MB

english, 2014

39

MicroRNA-Integrated and Network-Embedded Gene Selection with Diffusion Distance

Huang, Di, Zhou, Xiaobo, Lyon, Christopher J., Hsueh, Willa A., Wong, Stephen T. C., Di Bernardo, Diego

Journal:

Year:

2010

Language:

english

File:

PDF, 637 KB

english, 2010

40

A GPU algorithm for tracking yeast cells in phase-contrast microscopy images

Rea, Domenico, Perrino, Giansimone, di Bernardo, Diego, Marcellino, Livia, Romano, Diego

Journal:

International Journal of High Performance Computing Applications

Year:

2018

Language:

english

File:

PDF, 416 KB

english, 2018

41

Dissection of metabolic reprogramming in polycystic kidney disease reveals coordinated rewiring of bioenergetic pathways

Podrini, Christine, Rowe, Isaline, Pagliarini, Roberto, Costa, Ana S. H., Chiaravalli, Marco, Di Meo, Ivano, Kim, Hyunho, Distefano, Gianfranco, Tiranti, Valeria, Qian, Feng, di Bernardo, Diego, Frezz

Journal:

Communications Biology

Year:

2018

Language:

english

File:

PDF, 2.42 MB

english, 2018

42

Modeling RNA interference in mammalian cells

Giulia Cuccato, Athanasios Polynikis, Velia Siciliano, Mafalda Graziano, Mario di Bernardo, Diego di Bernardo

Journal:

BMC Systems Biology

Year:

2011

Language:

english

File:

PDF, 1.64 MB

english, 2011

43

Nanog Variability and Pluripotency Regulation of Embryonic Stem Cells - Insights from a Mathematical Model Analysis

Glauche, Ingmar, Herberg, Maria, Roeder, Ingo, Di Bernardo, Diego

Journal:

Year:

2010

Language:

english

File:

PDF, 661 KB

english, 2010

44

Viral Organization of Human Proteins

Wuchty, Stefan, Siwo, Geoffrey, Ferdig, Michael T., Di Bernardo, Diego

Journal:

Year:

2010

Language:

english

File:

PDF, 579 KB

english, 2010

45

Authors' reply to âon the existence of a linguistic distance in schizophreniaâ

Jongsma, Hannah E., Gayer-Anderson, Charlotte, van der Ven, Els, Quattrone, Diego, di Forti, Marta, Arango, Celso, Cascia, Catarina La, Bernardo, Miquel, Morgan, Craig, Jones, Peter B., Kirkbride, Jam

Journal:

Psychological Medicine

Year:

2020

File:

PDF, 187 KB

2020

46

Derivation, identification and validation of a computational model of a novel synthetic regulatory network in yeast

Lucia Marucci, Stefania Santini, Mario di Bernardo, Diego di Bernardo

Journal:

Journal of Mathematical Biology

Year:

2011

Language:

english

File:

PDF, 750 KB

english, 2011

47

How to infer gene networks from expression profiles

Bansal, Mukesh, Belcastro, Vincenzo, Ambesi-Impiombato, Alberto, di Bernardo, Diego

Journal:

Molecular Systems Biology

Year:

2007

Language:

english

File:

PDF, 173 KB

english, 2007

48

[IEEE 2010 International Joint Conference on Neural Networks (IJCNN) - Barcelona, Spain (2010.07.18-2010.07.23)] The 2010 International Joint Conference on Neural Networks (IJCNN) - Gene ontology fuzzy-enrichment analysis to investigate drug mode-of-action

Iorio, Francesco, Murino, Loredana, di Bernardo, Diego, Raiconi, Giancarlo, Tagliaferri, Roberto

Year:

2010

Language:

english

File:

PDF, 1.06 MB

english, 2010

49

Reverse Engineering Gene Network Identifies New Dysferlin-interacting Proteins

Cacciottolo, Mafalda, Belcastro, Vincenzo, Laval, Steve, Bushby, Kate, di Bernardo, Diego, Nigro, Vincenzo

Journal:

Journal of Biological Chemistry

Year:

2011

Language:

english

File:

PDF, 2.31 MB

english, 2011

50

Discovering Networks of Perturbed Biological Processes in Hepatocyte Cultures

Lasher, Christopher D., Rajagopalan, Padmavathy, Murali, T. M., Di Bernardo, Diego

Journal:

Year:

2011

Language:

english

File:

PDF, 1.36 MB

english, 2011

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